SMTL ID : 8yl3.1

Crystal Structure of Human Rab23 in Complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 22 residues within 4Å: Chain A: N.12, G.13, A.14, V.15, G.16, K.17, S.18, S.19, F.29, T.30, D.32, Y.33, K.34, K.35, N.116, K.117, D.119, L.120, S.146, V.147, K.148 Ligands: MG.2 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:N.12, A:A.14, A:V.15, A:G.16, A:K.17, A:S.18, A:S.19, A:S.19, A:Y.33, A:K.35, A:K.35, A:K.35, A:N.116, A:K.117, A:K.117, A:V.147, A:K.148 Water bridges: A:S.18, A:S.18, A:K.34, A:K.34, A:K.148 Salt bridges: A:K.17, A:K.34, A:D.119 pi-Stacking: A:F.29, A:F.29

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.18, K.35, D.59 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.18, H2O.1, H2O.1, H2O.2, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chau, Y.Y. et al., Structural basis for Rab23 activation and a loss-of-function mutation in Carpenter Syndrome. J.Biol.Chem. (2024)

Release Date

2024-12-04

Peptides

Ras-related protein Rab-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-23

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