SMTL ID : 8yl8.1

Crystal structure of the de novo designed protein 200 AA in the crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.139 Chain C: R.7 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Salt bridges: A:R.139, C:R.7 Water bridges: C:R.7, C:R.7 SO4.2: 5 residues within 4Å: Chain B: L.19, Y.29, Y.172, E.173, T.178 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.173, B:E.173 SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.4: 4 residues within 4Å: Chain B: D.136, R.139 Chain D: R.7, L.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Salt bridges: B:R.139, D:R.7 SO4.5: 5 residues within 4Å: Chain D: Y.29, R.30, Y.172, E.173, T.178 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.30, D:E.173 SO4.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, C. et al., Scalable protein design using optimization in a relaxed sequence space. Science (2024)

Release Date

2024-10-16

Peptides

De novo protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

De novo protein