SMTL ID : 8yle.1

Crystal structure of Werner syndrome helicase complexed with AMP-PCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 14 residues within 4Å: Chain A: H.30, S.32, F.33, K.34, Q.37, G.58, Y.59, G.60, K.61, S.62, L.85, Q.89, R.338, R.341 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:S.32, A:K.34, A:Q.37, A:G.60, A:K.61, A:K.61, A:S.62, A:Q.89, A:R.338, A:R.338, A:R.341, A:R.341 Water bridges: A:S.31, A:S.31, A:S.32, A:K.34, A:K.34, A:K.61, A:K.61, A:L.63, A:D.152, A:N.313 pi-Stacking: A:H.30, A:H.30

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: G.213, F.214, D.215, L.398, E.402, L.411 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.214, A:D.215, A:E.402, A:E.402 Water bridges: A:D.215 EDO.3: 6 residues within 4Å: Chain A: E.248, R.318, Q.319, Q.345, S.346, S.347 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.248, A:Q.345

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.392, C.419, C.420, C.423 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.392, A:C.419, A:C.420, A:C.423 ZN.5: 2 residues within 4Å: Chain A: H.42, E.47 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.42, A:E.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, R., Structure of werner syndrome helicase complexed with AMP-PCP at 1.86 Angstroms resolution. To Be Published

Release Date

2024-04-10

Peptides

Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN