SMTL ID : 8ym3.1

Structural basis of Elongation factor Tu in regulating photoinhibition in Synechococcus sp. PCC 7942.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL

GOL.1: 4 residues within 4Å: Chain A: K.323, R.328, H.329, T.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.329, A:T.330 GOL.2: 4 residues within 4Å: Chain A: F.5, E.6, R.7, T.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.7, A:T.8, A:T.8

1 x GDP: GUANOSINE-5'-DIPHOSPHATE

GDP.3: 17 residues within 4Å: Chain A: H.19, V.20, D.21, H.22, G.23, K.24, T.25, T.26, Y.46, N.135, K.136, D.138, M.139, S.173, A.174, L.175 Ligands: MG.6 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:D.21, A:H.22, A:G.23, A:K.24, A:T.25, A:T.26, A:T.26, A:Y.46, A:N.135, A:K.136, A:K.136, A:S.173, A:A.174, A:L.175 Water bridges: A:K.24, A:K.24, A:T.25, A:T.25, A:T.26, A:Y.46, A:S.81 Salt bridges: A:K.24, A:D.138

2 x BME: BETA-MERCAPTOETHANOL

BME.4: 9 residues within 4Å: Chain A: A.185, S.186, G.187, Q.188, G.190, D.191, N.192, V.195, D.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.188, A:D.191 BME.5: 3 residues within 4Å: Chain A: I.378, N.379, P.380 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION

MG.6: 4 residues within 4Å: Chain A: T.25, D.80, S.81 Ligands: GDP.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.25, H2O.2, H2O.4, H2O.5, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C. et al., Structural basis of Elongation factor Tu in regulating photoinhibition in Synechococcus sp. PCC 7942. To Be Published

Release Date

2025-03-19

Peptides

Elongation factor Tu: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor Tu