SMTL ID : 8yqq.1

Structure of HKU1B RBD with TMPRSS2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 2 residues within 4Å: Chain A: V.110, N.111 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.111, A:N.111 NAG.2: 3 residues within 4Å: Chain A: N.148, S.149, D.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.150 Salt bridges: A:K.178 NAG.3: 3 residues within 4Å: Chain A: N.33, S.35, T.36 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.33 NAG.4: 1 residues within 4Å: Chain A: N.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.132 NAG.5: 1 residues within 4Å: Ligands: NAG.6 No protein-ligand interaction detected (PLIP) NAG.6: 5 residues within 4Å: Chain B: N.105, K.115, L.117, Y.118 Ligands: NAG.5 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, X. et al., Structural basis for the interaction between human coronavirus HKU1 spike receptor binding domain and its receptor TMPRSS2. Cell Discov (2024)

Release Date

2024-08-28

Peptides

Spike protein S1: A
Transmembrane protease serine 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike protein S1

Transmembrane protease serine 2

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