SMTL ID : 8yr3.1

Cryo-EM structure of the human ABCB6 in complex with Cd(II):GSH

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 9 residues within 4Å: Chain A: R.230, R.234, L.289, N.293, N.340, W.341, T.344, R.347 Ligands: CD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.341 Hydrogen bonds: A:N.293, A:Q.296, A:T.344 Salt bridges: A:R.230, A:R.234, A:R.347 GSH.3: 11 residues within 4Å: Chain B: R.230, R.234, L.289, N.293, Q.296, N.340, W.341, G.343, T.344, R.347 Ligands: CD.2 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.341 Hydrogen bonds: B:N.293, B:G.343, B:T.344, B:T.344, B:T.344 Salt bridges: B:R.230, B:R.234, B:R.347

1 x CD: CADMIUM ION(Non-functional Binders)

CD.2: 2 residues within 4Å: Ligands: GSH.1, GSH.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, S.H. et al., Cryo-EM structure of cadmium-bound human ABCB6. Commun Biol (2024)

Release Date

2024-06-19

Peptides

ATP-binding cassette sub-family B member 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family B member 6

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