SMTL ID : 8yr6.1

Crystal structure of E. coli phosphatidylserine synthase complexed with 16:0/16:0 CDP-DG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x 01: Cdp-DG(16:0/16:0)

01.1: 29 residues within 4Å: Chain A: L.66, Y.67, R.101, R.104, R.106, I.107, E.142, A.143, V.146, H.148, K.150, G.162, Y.169, R.177, Y.283, D.315, F.316, I.326, I.327, L.330, L.333, Y.334, K.369, N.384, R.388, L.448, I.457, I.460, L.461 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:E.142, A:A.143, A:F.316, A:F.316, A:I.327, A:L.333, A:L.448, A:I.457, A:I.460, A:L.461 Hydrogen bonds: A:Y.67, A:R.101, A:R.104, A:R.104, A:R.106, A:I.107, A:I.107, A:Y.169, A:Y.169, A:Y.283, A:N.384 Water bridges: A:Y.67, A:K.369, A:K.369 Salt bridges: A:H.148, A:K.150, A:R.177, A:K.369, A:R.388 pi-Cation interactions: A:R.106

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.58, R.88 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.58, A:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J. et al., Crystal structure of E. coli phosphatidylserine synthase complexed with 16:0/16:0 CDP-DG. To Be Published

Release Date

2024-11-20

Peptides

CDP-diacylglycerol--serine O-phosphatidyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CDP-diacylglycerol--serine O-phosphatidyltransferase