- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x 01: 2-ethanoylbenzo[f][1]benzofuran-4,9-dione
01.3: 5 residues within 4Å:- Chain A: L.44, K.46
- Chain C: W.20
- Chain D: G.12, R.44
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:L.44, C:W.20
- Hydrogen bonds: A:K.46
- pi-Stacking: C:W.20
01.9: 6 residues within 4Å:- Chain E: L.44, K.46
- Chain G: W.20
- Chain H: G.12, R.44, K.122
3 PLIP interactions:2 interactions with chain G, 1 interactions with chain E- Hydrophobic interactions: G:W.20
- pi-Stacking: G:W.20
- Hydrogen bonds: E:K.46
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 4 residues within 4Å:- Chain C: D.95, N.123, I.125
- Ligands: TPP.6
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.95, C:I.125
MG.11: 4 residues within 4Å:- Chain G: D.95, N.123, I.125
- Ligands: TPP.12
2 PLIP interactions:2 interactions with chain G- Metal complexes: G:D.95, G:I.125
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.6: 21 residues within 4Å:- Chain B: P.28, I.29, P.80, R.106, T.111
- Chain C: I.51, G.52, C.53, S.54, H.70, G.94, D.95, G.96, D.97, N.123, I.125, Y.126, G.127, L.128, T.129
- Ligands: MG.5
15 PLIP interactions:13 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:Y.126, C:T.129, B:P.80
- Hydrogen bonds: C:C.53, C:S.54, C:S.54, C:D.95, C:G.96, C:D.97, C:D.97, C:N.123, C:G.127, C:L.128, B:R.106
- pi-Stacking: C:H.70
TPP.12: 21 residues within 4Å:- Chain B: E.87
- Chain F: P.28, I.29, P.80, R.106, T.111
- Chain G: G.52, C.53, S.54, H.70, G.94, D.95, G.96, D.97, N.123, I.125, Y.126, G.127, L.128, T.129
- Ligands: MG.11
14 PLIP interactions:11 interactions with chain G, 3 interactions with chain F- Hydrophobic interactions: G:H.70, F:I.29, F:P.80
- Hydrogen bonds: G:C.53, G:S.54, G:H.70, G:G.94, G:G.96, G:D.97, G:N.123, G:G.127, G:L.128, F:R.106
- pi-Stacking: G:H.70
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lan, W. et al., Helicobacter pylori OorDABC in complex with Napabucasin. To Be Published
- Release Date
- 2025-07-02
- Peptides
- 2-oxoglutarate:acceptor oxidoreductase: AE
2-oxoglutarate synthase subunit alpha: BF
2-oxoglutarate ferredoxin oxidoreductase subunit beta: CG
2-oxoglutarate:acceptor oxidoreductase: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DE
FB
AF
GC
CG
HD
BH
I
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x 01: 2-ethanoylbenzo[f][1]benzofuran-4,9-dione
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lan, W. et al., Helicobacter pylori OorDABC in complex with Napabucasin. To Be Published
- Release Date
- 2025-07-02
- Peptides
- 2-oxoglutarate:acceptor oxidoreductase: AE
2-oxoglutarate synthase subunit alpha: BF
2-oxoglutarate ferredoxin oxidoreductase subunit beta: CG
2-oxoglutarate:acceptor oxidoreductase: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DE
FB
AF
GC
CG
HD
BH
I