SMTL ID : 8yt4.3 (4 other biounits)

Structure of Aquifex aeolicus Lumazine Synthase by Cryo-Electron Microscopy to 1.42 Angstrom Resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 1.42 Å

Oligo State

homo-pentamer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.127 Chain B: G.84, A.85, T.86, H.88 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:A.85, B:T.86 Water bridges: B:G.84, B:T.86, A:K.135, A:K.135 Salt bridges: A:R.127 PO4.2: 5 residues within 4Å: Chain B: R.127 Chain C: G.84, A.85, T.86, H.88 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain C Water bridges: B:K.135, B:K.135, C:G.84, C:G.84 Salt bridges: B:R.127 Hydrogen bonds: C:A.85, C:T.86 PO4.3: 5 residues within 4Å: Chain C: R.127 Chain D: G.84, A.85, T.86, H.88 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain D Water bridges: C:K.135, C:K.135, D:G.84, D:G.84 Salt bridges: C:R.127 Hydrogen bonds: D:A.85, D:T.86 PO4.4: 5 residues within 4Å: Chain D: R.127 Chain E: G.84, A.85, T.86, H.88 7 PLIP interactions: 4 interactions with chain E, 3 interactions with chain D Hydrogen bonds: E:A.85, E:T.86 Water bridges: E:G.84, E:T.86, D:K.135, D:K.135 Salt bridges: D:R.127 PO4.5: 5 residues within 4Å: Chain A: G.84, A.85, T.86, H.88 Chain E: R.127 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain E Hydrogen bonds: A:A.85, A:T.86 Water bridges: A:G.84, A:T.86, E:K.135, E:K.135 Salt bridges: E:R.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Savva, C.G. et al., Structure of Aquifex aeolicus lumazine synthase by cryo-electron microscopy to 1.42 angstrom resolution. Iucrj (2024)

Release Date

2024-04-10

Peptides

6,7-dimethyl-8-ribityllumazine synthase: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

6,7-dimethyl-8-ribityllumazine synthase

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