SMTL ID : 8ytl.1

Human PPAR alpha ligand binding domain in complex with a 1H-pyrazolo[3,4-b]pyridine-derived compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.1: 8 residues within 4Å: Chain A: N.23, T.83, L.135, V.136, A.137, Y.138, G.139 Ligands: 01.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.138 Hydrogen bonds: A:Y.138, A:G.139 Water bridges: A:L.135

1 x 01: 1-(4-fluorophenyl)-6-[4-[(2-methylpropan-2-yl)oxycarbonyl]piperazin-1-yl]-3-pentan-3-yl-pyrazolo[3,4-b]pyridine-4-carboxylic acid

01.2: 23 residues within 4Å: Chain A: I.76, F.77, C.80, Q.81, T.83, S.84, T.87, Y.118, I.121, L.125, V.128, M.134, L.148, L.151, I.158, M.159, H.244, V.248, I.251, L.260, L.264, Y.268 Ligands: PGO.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.76, A:F.77, A:Q.81, A:T.87, A:L.125, A:V.128, A:I.158, A:V.248, A:I.251, A:L.260, A:L.264 Hydrogen bonds: A:S.84, A:S.84, A:Y.118, A:Y.268 Salt bridges: A:H.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tachibana, K. et al., Structural evolution of 1H-pyrazolo[3,4-b]pyridine-derived PPARalpha activators as leads for nonalcoholic steatohepatitis. To Be Published

Release Date

2025-04-02

Peptides

Peroxisome proliferator-activated receptor alpha: A
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor alpha

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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