SMTL ID : 8yub.2 (1 other biounit)

Crystal structure of SARS-CoV-2 ConSp RBD in complex with neutralizing antibody CC25.4 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 4 residues within 4Å: Chain A: H.7, N.11, T.13, F.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.11, A:N.11 Water bridges: A:N.11, A:T.13 Hydrophobic interactions: A:F.39

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain B: G.42, Q.43, G.44 Chain C: D.86, Y.88, G.104, G.105 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, J.M. et al., Structure and antigenic characteristics of consensus sequence-based SARS-CoV-2 antigen. To Be Published

Release Date

2025-10-01

Peptides

Spike protein S2': A
Neutralizing antibody CC25.4 heavy chain: B
Neutralizing antibody CC25.4 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

Spike protein S2'

Neutralizing antibody CC25.4 heavy chain

Neutralizing antibody CC25.4 light chain

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