SMTL ID : 8yvw.1

Crystal structure of D12N mutant of L-azetidine-2-carboxylate hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

monomer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: N.12, C.13, Y.14, S.121, N.122, K.152 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.12, A:C.13, A:Y.14, A:N.122, A:K.152 Water bridges: A:Y.14, A:K.152 FMT.2: 3 residues within 4Å: Chain A: V.25, S.41, L.45 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.41 Water bridges: A:E.21, A:R.202, A:R.202

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 4 residues within 4Å: Chain A: S.53, P.54, T.57, Y.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.57, A:T.57, A:Y.183

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 1 residues within 4Å: Chain A: E.58 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.58, H2O.1, H2O.10, H2O.10, H2O.11, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toyoda, M. et al., Research for the crystal structure of L-azetidine-2-carboxylate hydrolase. To Be Published

Release Date

2024-05-08

Peptides

(S)-2-haloacid dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

(S)-2-haloacid dehalogenase