SMTL ID : 8yw8.1

Cryo-EM structure of human mitochondrial pyruvate carrier in complex with the inhibitor UK5099

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 23 residues within 4Å: Chain A: R.10, Y.13, H.14, L.16, L.17, K.19, V.20, M.23, L.24, L.31, Y.32, P.38, R.39, T.40, V.41, F.43, W.44, M.48 Chain C: C.61, L.64, T.65, R.68, K.72 30 PLIP interactions: 21 interactions with chain A, 9 interactions with chain C Hydrophobic interactions: A:L.16, A:L.17, A:V.20, A:V.20, A:L.24, A:L.24, A:L.31, A:Y.32, A:Y.32, A:P.38, A:F.43, A:W.44, A:W.44, A:W.44, A:W.44, C:L.64, C:T.65, C:R.68 Hydrogen bonds: A:R.10, A:R.10, A:Y.13, A:T.40, A:V.41, C:R.68, C:K.72 Salt bridges: A:R.10, C:R.68, C:R.68, C:R.68, C:K.72

1 x I2R: (E)-2-cyano-3-(1-phenylindol-3-yl)prop-2-enoic acid(Non-covalent)

I2R.2: 13 residues within 4Å: Chain A: P.46, K.49, W.82, Y.85, N.93, L.96, N.100 Chain C: N.33, Y.62, F.66, F.69, L.80, H.84 11 PLIP interactions: 6 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:F.66, C:F.69, C:F.69, C:F.69, A:W.82, A:W.82, A:L.96 Hydrogen bonds: C:N.33, A:N.100 Salt bridges: C:H.84, A:K.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, J.H. et al., A membrane transporter complex. To Be Published

Release Date

2025-03-12

Peptides

Mitochondrial pyruvate carrier 2: A
MPC specific nanobody 1: B
Mitochondrial pyruvate carrier 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

Membrane

We predict this structure to be a membrane protein.
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Mitochondrial pyruvate carrier 2

MPC specific nanobody 1

Mitochondrial pyruvate carrier 1

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