SMTL ID : 8z02.1

CoA bound to human GTP-specific succinyl-CoA synthetase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-1-1-mer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 19 residues within 4Å: Chain A: G.22, T.24, G.25, K.26, Q.27, T.46, T.47, P.48, K.50, Y.79, V.80, P.81, P.82, I.103, T.104, E.105, N.131, C.132, P.133 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.27, A:T.104, A:E.105 Hydrogen bonds: A:G.22, A:K.26, A:Q.27, A:I.103, A:E.105 Water bridges: A:T.24, A:T.46, A:E.91, A:E.91 Salt bridges: A:K.26, A:K.26, A:K.50

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: S.162, G.163, T.164, H.259 Chain B: G.272, A.273, G.274, L.275 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.163, A:T.164, A:T.164, A:T.164, B:A.273, B:G.274, B:L.275 Salt bridges: A:H.259 Water bridges: B:G.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, R. et al., Nuclear GTPSCS functions as a lactyl-CoA synthetase to promote histone lactylation and gliomagenesis. Cell Metab. (2024)

Release Date

2024-12-11

Peptides

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial: A
Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial

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