SMTL ID : 8z0f.1

Cryo-EM structure of ATP-bound human very long-chain fatty acid ABC transporter ABCD3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE

ATP.1: 22 residues within 4Å: Chain A: N.186, T.458, P.459, N.460, L.464, N.484, G.485, C.486, G.487, K.488, S.489, S.490, R.493, W.499, Q.519, H.634 Chain B: V.579, L.580, S.581, G.582, G.583, E.584 14 PLIP interactions: 3 interactions with chain B, 11 interactions with chain A Hydrogen bonds: B:V.579, B:G.583, B:E.584, A:N.484, A:G.485, A:G.485, A:C.486, A:G.487, A:K.488, A:S.489, A:S.489, A:S.490, A:Q.519 Salt bridges: A:K.488 ATP.2: 24 residues within 4Å: Chain A: E.567, V.579, L.580, S.581, G.582, G.583, E.584 Chain B: N.186, T.458, P.459, N.460, L.464, N.484, G.485, C.486, G.487, K.488, S.489, S.490, R.493, W.499, Q.519, Q.605, H.634 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.484, B:G.485, B:C.486, B:G.487, B:K.488, B:S.489, B:S.489, B:S.490, B:Q.519, B:Q.605, A:G.583 Salt bridges: B:K.488

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, L. et al., Structural insights into human ABCD3-mediated peroxisomal acyl-CoA translocation. To Be Published

Release Date

2024-09-18

Peptides

ATP-binding cassette sub-family D member 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family D member 3