SMTL ID : 8z1f.1

Cryo-EM structure of human ELAC2-tRNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain B: H.546, H.548, H.551, H.644, D.666 Ligands: ZN.2, PO4.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.546, B:H.548, B:D.666 ZN.2: 5 residues within 4Å: Chain B: H.551, D.666, H.724 Ligands: ZN.1, PO4.3 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.666, B:H.724

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain B: S.490, A.491, H.548, D.550, H.551, D.666, H.702, H.724 Ligands: ZN.1, ZN.2 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.550, B:D.666 Salt bridges: B:H.548, B:H.551, B:H.702, B:H.724

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, C. et al., Structural insights into human ELAC2 as a tRNA 3' processing enzyme. Nucleic Acids Res. (2024)

Release Date

2024-12-18

Peptides

Zinc phosphodiesterase ELAC protein 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

Zinc phosphodiesterase ELAC protein 2

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