SMTL ID : 8z1h.1

Crystal structure of SARS main protease in complex with PF-00835231

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

homo-dimer

Ligands

2 x V2M: N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide

V2M.1: 18 residues within 4Å: Chain A: H.38, F.137, L.138, N.139, G.140, S.141, C.142, H.160, H.161, M.162, E.163, P.165, H.169, D.184, R.185, Q.186, T.187, A.188 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:D.184, A:Q.186, A:A.188 Hydrogen bonds: A:F.137, A:G.140, A:S.141, A:S.141, A:C.142, A:H.161, A:E.163, A:E.163, A:Q.186, A:Q.186 V2M.2: 17 residues within 4Å: Chain B: L.24, H.38, F.137, L.138, N.139, G.140, S.141, C.142, H.160, H.161, M.162, E.163, H.169, D.184, Q.186, T.187, A.188 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:H.38, B:D.184, B:A.188 Hydrogen bonds: B:F.137, B:G.140, B:S.141, B:S.141, B:C.142, B:H.161, B:E.163, B:E.163, B:E.163, B:Q.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, C. et al., Crystal structure of SARS main protease in complex with PF-00835231. To Be Published

Release Date

2025-03-19

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5