SMTL ID : 8z2j.1 (1 other biounit)

Substrate analog a012 bound form of PET-degrading cutinase mutant Cut190**SS_S176A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 1 residues within 4Å: Chain A: R.255 No protein-ligand interaction detected (PLIP)

1 x 01: (4-methoxycarbonylphenyl)-(2-phenylmethoxyethoxy)phosphinic acid

01.2: 9 residues within 4Å: Chain A: G.61, F.62, T.63, A.132, M.133, W.157, I.180, H.210, F.211 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.62, A:F.62 Hydrogen bonds: A:F.62, A:M.133 pi-Stacking: A:W.157, A:W.157

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: S.32, F.33, A.34, F.37, N.89 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.32, A:A.34, A:F.37, H2O.4, H2O.8, H2O.10 CA.4: 1 residues within 4Å: Chain A: Y.254 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:Y.254, H2O.6, H2O.7, H2O.8, H2O.10, H2O.12

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: D.178, T.179, T.209, H.210 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numoto, N. et al., Structural dynamics of the Ca 2+ -regulated cutinase towards structure-based improvement of PET degradation activity. Int.J.Biol.Macromol. (2024)

Release Date

2024-11-06

Peptides

Alpha/beta hydrolase family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta hydrolase family protein

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