- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.83 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: D.26, N.28, D.30, K.32, D.34, D.79
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.26, A:D.30, A:K.32, A:D.34
MG.5: 5 residues within 4Å:- Chain B: D.26, N.28, D.30, K.32, D.34
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.26, B:D.30, B:K.32, B:D.34
MG.8: 6 residues within 4Å:- Chain C: D.26, N.28, D.30, K.32, D.34, D.79
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.26, C:D.30, C:K.32, C:D.34
MG.11: 6 residues within 4Å:- Chain D: D.26, N.28, D.30, K.32, D.34, D.79
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.26, D:D.30, D:D.30, D:K.32, D:D.34
- 4 x VDM: (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL(Non-covalent)
VDM.3: 18 residues within 4Å:- Chain A: D.65, Y.68, H.108, F.153, F.175, Q.179, R.209, D.211, Y.215, E.253, N.255, H.320, D.321, E.322, T.324, E.326, R.400, R.404
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:F.175
- Hydrogen bonds: A:D.65, A:H.108, A:Q.179, A:R.209, A:R.209, A:D.211, A:Y.215, A:E.253, A:E.253, A:N.255, A:H.320, A:E.322, A:T.324, A:R.400, A:R.400, A:R.404
VDM.6: 17 residues within 4Å:- Chain B: D.65, Y.68, H.108, F.153, F.175, Q.179, R.209, D.211, Y.215, E.253, N.255, H.320, D.321, E.322, T.324, E.326, R.400
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:F.175
- Hydrogen bonds: B:D.65, B:H.108, B:Q.179, B:R.209, B:R.209, B:E.253, B:E.253, B:N.255, B:H.320, B:E.322, B:T.324, B:T.324, B:R.400, B:R.400, B:R.404
VDM.9: 17 residues within 4Å:- Chain C: D.65, Y.68, H.108, F.153, F.175, Q.179, R.209, D.211, E.253, N.255, H.320, D.321, E.322, T.324, E.326, R.400, R.404
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:F.175
- Hydrogen bonds: C:D.65, C:D.65, C:H.108, C:Q.179, C:R.209, C:R.209, C:Y.215, C:E.253, C:E.253, C:N.255, C:H.320, C:E.322, C:T.324, C:R.400, C:R.400, C:R.404
VDM.12: 16 residues within 4Å:- Chain D: D.65, Y.68, H.108, F.153, Q.179, R.209, D.211, E.253, N.255, H.320, D.321, E.322, T.324, E.326, R.400, R.404
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:D.65, D:D.65, D:H.108, D:Q.179, D:R.209, D:R.209, D:E.253, D:E.253, D:N.255, D:H.320, D:E.322, D:E.326, D:R.400, D:R.400, D:R.404
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ye, L.C. et al., Structural and Mutational Analyses of Trehalose Synthase from Deinococcus radiodurans Reveal the Interconversion of Maltose-Trehalose Mechanism. J.Agric.Food Chem. (2024)
- Release Date
- 2025-01-01
- Peptides
- maltose alpha-D-glucosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.83 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x VDM: (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ye, L.C. et al., Structural and Mutational Analyses of Trehalose Synthase from Deinococcus radiodurans Reveal the Interconversion of Maltose-Trehalose Mechanism. J.Agric.Food Chem. (2024)
- Release Date
- 2025-01-01
- Peptides
- maltose alpha-D-glucosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D