SMTL ID : 8z2x.1

Crystal structure of exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl) as a complex with cellobiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 9 residues within 4Å: Chain A: F.154, N.156, F.263, L.310, N.311, R.318, Y.323 Ligands: BGC.2, BGC.3 No protein-ligand interaction detected (PLIP)

2 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.2: 12 residues within 4Å: Chain A: E.43, W.45, H.145, N.156, N.198, E.199, Y.260, F.263, E.298, L.310, W.371 Ligands: BGC-BGC.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.43, A:H.145, A:H.145, A:N.198, A:E.199, A:L.310 Water bridges: A:N.156, A:N.156 BGC.3: 7 residues within 4Å: Chain A: H.258, H.259, Y.260, F.263, D.264, F.282 Ligands: BGC-BGC.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.258, A:H.259, A:Y.260, A:F.263 Water bridges: A:H.258

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: L.186, S.188, V.191, N.226, T.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerjee, B. et al., Crystal structures of Aspergillus oryzae exo-beta-(1,3)-glucanase reveal insights into oligosaccharide binding, recognition, and hydrolysis. Febs Lett. (2025)

Release Date

2024-11-06

Peptides

Glucan 1,3-beta-glucosidase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucan 1,3-beta-glucosidase A

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