SMTL ID : 8z35.1

Crystal Structure of HIF-PHD2 in complex with compound 7 (DS44470011)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.134, D.136, H.195 Ligands: 01.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, A:D.136, A:H.195, H2O.2

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.6, H.7, H.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.6, A:H.8 Salt bridges: A:H.7 SO4.3: 2 residues within 4Å: Chain A: H.4, H.5 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.4, A:H.5

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: K.25, H.26 Ligand excluded by PLIP

1 x 01: 2-[[6-methyl-5-oxidanyl-2-[(4-phenylphenyl)methyl]pyrimidin-4-yl]carbonylamino]ethanoic acid

01.5: 19 residues within 4Å: Chain A: R.73, D.75, W.79, T.117, M.120, Y.124, Y.131, H.134, D.136, R.143, I.148, Y.150, L.164, H.195, V.197, R.204, A.206, W.210 Ligands: FE2.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.79, A:T.117, A:Y.131, A:W.210, A:W.210 Hydrogen bonds: A:R.73, A:Y.150 Water bridges: A:T.208 Salt bridges: A:R.204 pi-Stacking: A:W.210 pi-Cation interactions: A:R.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fukuda, T. et al., Discovery of DS44470011: An oral hypoxia-inducible factor prolyl hydroxylase inhibitor for the treatment of renal anemia. Bioorg.Med.Chem.Lett. (2024)

Release Date

2025-02-26

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1

Related Entries With Identical Sequence