SMTL ID : 8z3a.1

Crystal structure of Sonic hedgehog in complex with antibody 5E1 without metals

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.127 Chain B: W.47, R.52, N.59, D.104 Chain C: S.94, P.96 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.52, B:N.59, B:D.104, A:R.127 Water bridges: B:D.104

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 5 residues within 4Å: Chain C: S.28, V.29, S.30, Y.67, G.68 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaneda, I. et al., Biophysical insights to improve affinity of antibodies to fluctuated epitope of antigen: A case of anti-Shh antibody 5E1 against Shh antigen. To Be Published

Release Date

2025-04-16

Peptides

Sonic hedgehog protein N-product: A
Heavy chain of antibody 5E1: B
Light chain of antibody 5E1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Sonic hedgehog protein N-product

Heavy chain of antibody 5E1

Light chain of antibody 5E1

Related Entries With Identical Sequence