SMTL ID : 8z4w.2 (3 other biounits)

Crystal structures of SARS-CoV-2 papain-like protease in complex with covalent inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

1 x 01: 1-[4-[[[4-(isoquinolin-5-ylamino)-6-(methylamino)-1,3,5-triazin-2-yl]amino]methyl]piperidin-1-yl]ethanone

01.1: 9 residues within 4Å: Chain A: W.107, N.110, N.111, C.112, L.163, N.268, Q.270, C.271, H.273 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.110, A:L.163 Hydrogen bonds: A:C.112

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.190, C.193, C.225, C.227 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.225, A:C.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Covalent DNA-Encoded Library Workflow Drives Discovery of SARS-CoV-2 Nonstructural Protein Inhibitors. J.Am.Chem.Soc. (2024)

Release Date

2025-02-26

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Non-structural protein 3

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