SMTL ID : 8z62.2 (1 other biounit)

Crystal structure of rRNA (uracil-C5)-methyltransferase from Pyrococcus horikoshii OT3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: I.136, P.140, I.141, F.142, S.143, T.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.142, A:S.143, A:T.146

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: Q.75, W.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.75 PEG.3: 4 residues within 4Å: Chain A: N.13, P.130, P.401, H.402 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saha, S. et al., Decoding Substrate Selectivity of an Archaeal RlmCD-like Methyltransferase Through Its Salient Traits. Biochemistry (2024)

Release Date

2024-10-16

Peptides

23S rRNA (uracil(747)-C(5))-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

23S rRNA (uracil(747)-C(5))-methyltransferase

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