- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA.1: 1 residues within 4Å:- Chain A: N.1134
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.10: 1 residues within 4Å:- Chain C: N.1134
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.19: 1 residues within 4Å:- Chain E: N.1134
No protein-ligand interaction detected (PLIP)- 24 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 4 residues within 4Å:- Chain A: N.1098, T.1100, H.1101, F.1103
No protein-ligand interaction detected (PLIP)NAG-NAG.3: 3 residues within 4Å:- Chain A: N.801, S.803, Q.804
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 3 residues within 4Å:- Chain A: N.717, L.922, Q.1071
No protein-ligand interaction detected (PLIP)NAG-NAG.5: 3 residues within 4Å:- Chain A: N.709, G.1131
- Chain E: D.796
No protein-ligand interaction detected (PLIP)NAG-NAG.6: 3 residues within 4Å:- Chain A: C.15, N.17, N.137
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.137
NAG-NAG.7: 3 residues within 4Å:- Chain A: N.122, T.124, V.171
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.171
NAG-NAG.8: 3 residues within 4Å:- Chain A: N.331, Q.580, L.582
No protein-ligand interaction detected (PLIP)NAG-NAG.9: 5 residues within 4Å:- Chain A: F.338, G.339, F.342, N.343, V.367
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 4 residues within 4Å:- Chain C: N.1098, T.1100, H.1101, F.1103
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 3 residues within 4Å:- Chain C: N.801, S.803, Q.804
No protein-ligand interaction detected (PLIP)NAG-NAG.13: 3 residues within 4Å:- Chain C: N.717, L.922, Q.1071
No protein-ligand interaction detected (PLIP)NAG-NAG.14: 3 residues within 4Å:- Chain A: D.796
- Chain C: N.709, G.1131
No protein-ligand interaction detected (PLIP)NAG-NAG.15: 3 residues within 4Å:- Chain C: C.15, N.17, N.137
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.137
NAG-NAG.16: 3 residues within 4Å:- Chain C: N.122, T.124, V.171
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:V.171
NAG-NAG.17: 3 residues within 4Å:- Chain C: N.331, Q.580, L.582
No protein-ligand interaction detected (PLIP)NAG-NAG.18: 5 residues within 4Å:- Chain C: F.338, G.339, F.342, N.343, V.367
No protein-ligand interaction detected (PLIP)NAG-NAG.20: 4 residues within 4Å:- Chain E: N.1098, T.1100, H.1101, F.1103
No protein-ligand interaction detected (PLIP)NAG-NAG.21: 3 residues within 4Å:- Chain E: N.801, S.803, Q.804
No protein-ligand interaction detected (PLIP)NAG-NAG.22: 3 residues within 4Å:- Chain E: N.717, L.922, Q.1071
No protein-ligand interaction detected (PLIP)NAG-NAG.23: 3 residues within 4Å:- Chain C: D.796
- Chain E: N.709, G.1131
No protein-ligand interaction detected (PLIP)NAG-NAG.24: 3 residues within 4Å:- Chain E: C.15, N.17, N.137
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.137
NAG-NAG.25: 3 residues within 4Å:- Chain E: N.122, T.124, V.171
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:V.171
NAG-NAG.26: 3 residues within 4Å:- Chain E: N.331, Q.580, L.582
No protein-ligand interaction detected (PLIP)NAG-NAG.27: 5 residues within 4Å:- Chain E: F.338, G.339, F.342, N.343, V.367
No protein-ligand interaction detected (PLIP)- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.28: 4 residues within 4Å:- Chain A: A.706, E.1072, K.1073, N.1074
Ligand excluded by PLIPNAG.29: 1 residues within 4Å:- Chain A: N.657
Ligand excluded by PLIPNAG.30: 2 residues within 4Å:- Chain A: N.616, Q.644
Ligand excluded by PLIPNAG.31: 4 residues within 4Å:- Chain A: N.280, E.281, N.282
- Chain C: K.558
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain A: Y.28, N.30, N.61
Ligand excluded by PLIPNAG.33: 4 residues within 4Å:- Chain A: H.146, N.148, N.149, M.153
Ligand excluded by PLIPNAG.34: 3 residues within 4Å:- Chain A: Q.115, E.132, N.165
Ligand excluded by PLIPNAG.35: 1 residues within 4Å:- Chain A: N.234
Ligand excluded by PLIPNAG.36: 4 residues within 4Å:- Chain C: A.706, E.1072, K.1073, N.1074
Ligand excluded by PLIPNAG.37: 1 residues within 4Å:- Chain C: N.657
Ligand excluded by PLIPNAG.38: 2 residues within 4Å:- Chain C: N.616, Q.644
Ligand excluded by PLIPNAG.39: 4 residues within 4Å:- Chain C: N.280, E.281, N.282
- Chain E: K.558
Ligand excluded by PLIPNAG.40: 3 residues within 4Å:- Chain C: Y.28, N.30, N.61
Ligand excluded by PLIPNAG.41: 4 residues within 4Å:- Chain C: H.146, N.148, N.149, M.153
Ligand excluded by PLIPNAG.42: 3 residues within 4Å:- Chain C: Q.115, E.132, N.165
Ligand excluded by PLIPNAG.43: 1 residues within 4Å:- Chain C: N.234
Ligand excluded by PLIPNAG.44: 4 residues within 4Å:- Chain E: A.706, E.1072, K.1073, N.1074
Ligand excluded by PLIPNAG.45: 1 residues within 4Å:- Chain E: N.657
Ligand excluded by PLIPNAG.46: 2 residues within 4Å:- Chain E: N.616, Q.644
Ligand excluded by PLIPNAG.47: 4 residues within 4Å:- Chain A: K.558
- Chain E: N.280, E.281, N.282
Ligand excluded by PLIPNAG.48: 3 residues within 4Å:- Chain E: Y.28, N.30, N.61
Ligand excluded by PLIPNAG.49: 3 residues within 4Å:- Chain E: N.148, N.149, M.153
Ligand excluded by PLIPNAG.50: 3 residues within 4Å:- Chain E: Q.115, E.132, N.165
Ligand excluded by PLIPNAG.51: 1 residues within 4Å:- Chain E: N.234
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, Z. et al., Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation. To Be Published
- Release Date
- 2025-02-05
- Peptides
- Spike glycoprotein: ACE
Angiotensin-converting enzyme 2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
CE
AB
ED
FF
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 24 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, Z. et al., Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation. To Be Published
- Release Date
- 2025-02-05
- Peptides
- Spike glycoprotein: ACE
Angiotensin-converting enzyme 2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
CE
AB
ED
FF
D