SMTL ID : 8z6c.1 (2 other biounits)

Crystal structure of HDGFRP2 PWWP domain in complex with 4-(4-bromo-1H-pyrazol-3-yl) pyridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x 01: 4-(4-bromanyl-1~{H}-pyrazol-3-yl)pyridine

01.1: 7 residues within 4Å: Chain A: M.15, Y.18, W.21, F.44, T.47, E.49, A.51 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.18, A:F.44 Hydrogen bonds: A:T.47, A:E.49 pi-Stacking: A:W.21, A:W.21, A:F.44

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.75, G.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.76 SO4.3: 4 residues within 4Å: Chain A: K.14, K.16, G.17, Y.18 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:K.14, A:M.15 Salt bridges: A:K.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Fragment based discovery of small molecule inhibitors of the HDGFRP2 PWWP domain. To Be Published

Release Date

2025-04-23

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatoma-derived growth factor-related protein 2

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