SMTL ID : 8z6h.1

Structure of Polycystin-1/Polycystin-2 complex with Phosphatidylglycerol-bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-3-mer

Ligands

1 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)

PGW.1: 21 residues within 4Å: Chain A: L.994, R.1052, L.1053, W.1054, G.1055, A.1056, R.1058, L.1059 Chain D: F.545, F.606, A.633, L.636, F.637, A.640, I.679, F.708, L.712, N.713, F.715, L.716, I.719 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:A.1056, A:L.1059, D:F.545, D:F.715, D:I.719 Hydrogen bonds: A:R.1052 Salt bridges: A:R.1058

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain B: R.359, D.412, L.413, N.414, Y.431 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.413 Hydrogen bonds: B:R.359, B:D.412 NAG.3: 2 residues within 4Å: Chain B: N.367, E.382 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.382, B:E.382 NAG.4: 3 residues within 4Å: Chain C: N.367, K.381, E.382 No protein-ligand interaction detected (PLIP) NAG.5: 5 residues within 4Å: Chain C: R.359, D.412, L.413, N.414, Y.431 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.413 Hydrogen bonds: C:R.359, C:D.412 NAG.6: 2 residues within 4Å: Chain D: N.367, E.382 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:E.382 Hydrogen bonds: D:E.382, D:E.382 NAG.7: 1 residues within 4Å: Chain D: N.414 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M. et al., Structure of Polycystin-1/Polycystin-2 complex with Phosphatidylglycerol-bound. To Be Published

Release Date

2025-04-23

Peptides

Polycystin-1: A
Polycystin-2: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Polycystin-1

Polycystin-2

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