SMTL ID : 8z7n.1

Structure of HIV-1 CH119 SOSIP.664 trimer in complex with CD4 molecules

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.94 Chain B: G.16, S.17, T.18 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.358 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain B: N.100, S.102, W.103 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain B: S.101, N.105 Ligand excluded by PLIP NAG.5: 4 residues within 4Å: Chain B: K.109, E.110, D.113, N.114 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain B: N.126 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain D: N.94 Chain E: T.18, D.113 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain D: N.358 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain E: N.100, S.102, W.103 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain E: S.101, N.105 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain E: K.109, E.110, D.113, N.114 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain E: N.126 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain G: N.94 Chain H: T.18 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain G: N.358 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain H: N.100, S.102, W.103 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain H: S.101, N.105 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain H: K.109, E.110, D.113, N.114 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain H: N.126 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, D. et al., Intermediate open state of CD4-bound HIV-1 env heterotrimers in asia CRFs. Biochem Biophys Res Commun (2024)

Release Date

2024-09-18

Peptides

Envelope glycoprotein gp160: ADG
Envelope glycoprotein gp160: BEH
T-cell surface glycoprotein CD4: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

B
B

E
E

H
H

C
C

F
F

I
I

Envelope glycoprotein gp160

Envelope glycoprotein gp160

T-cell surface glycoprotein CD4