SMTL ID : 8z97.1

Cryo-EM structure of Thogoto virus polymerase in a transcription elongation conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x G- C- A- A- A- A- A- C- A: RNA (5'-R(P*GP*CP*AP*AP*AP*AP*AP*CP*A)-3')(Non-covalent)

G-C-A-A-A-A-A-C-A.1: 33 residues within 4Å: Chain B: Y.22, K.120, R.122, S.421, D.422, D.423, N.471, S.472, T.485, P.488, A.489, N.493 Chain C: R.43, T.45, K.48, K.49, D.50, H.51, A.52, P.53, Q.54 Chain F: C.7, U.8, G.9, U.10, U.11, U.12, U.13, U.14, G.15, C.16, U.17 Ligands: V9G.2 Protein-ligand interaction information (PLIP) not available

1 x V9G: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE(Non-covalent)

V9G.2: 9 residues within 4Å: Chain B: V.669, L.670, I.671, Q.672, E.673 Chain C: K.42, R.217 Chain F: U.17 Ligands: G-C-A-A-A-A-A-C-A.1 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.42, C:K.42, C:R.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, L. et al., Cryo-EM structures of Thogoto virus polymerase reveal unique RNA transcription and replication mechanisms among orthomyxoviruses. Nat Commun (2024)

Release Date

2024-05-29

Peptides

Polymerase acidic protein: A
RNA-directed RNA polymerase catalytic subunit: B
Polymerase basic protein 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Polymerase acidic protein

RNA-directed RNA polymerase catalytic subunit

Polymerase basic protein 2

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