SMTL ID : 8z9c.1

Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state I

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-1-4-mer

Ligands

9 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.71, C.81, C.84, T.86, C.87 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.71, A:C.81, A:C.84, A:C.87 ZN.2: 4 residues within 4Å: Chain B: C.71, C.81, C.84, C.87 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.71, B:C.81, B:C.87 ZN.3: 6 residues within 4Å: Chain C: C.71, P.80, C.81, G.82, C.84, C.87 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.71, C:C.81, C:C.84, C:C.87 ZN.4: 5 residues within 4Å: Chain D: C.71, C.81, G.82, C.84, C.87 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.71, D:C.81, D:C.84, D:C.87 ZN.5: 5 residues within 4Å: Chain E: C.71, C.81, C.84, T.86, C.87 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.71, E:C.81, E:C.84, E:C.87 ZN.6: 4 residues within 4Å: Chain F: C.71, C.81, C.84, C.87 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:C.71, F:C.84, F:C.87 ZN.7: 6 residues within 4Å: Chain G: C.70, C.85, S.87, C.88, N.89, E.90 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.70, G:C.85, G:S.87, G:C.88 ZN.8: 5 residues within 4Å: Chain H: H.62, H.64, H.148, D.169 Chain N: A.2 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.62, H:H.64, H:H.148, H:D.169 ZN.9: 5 residues within 4Å: Chain J: C.71, C.81, G.82, C.84, C.87 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.71, J:C.81, J:C.84, J:C.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Structural basis for the activity of the type VII CRISPR-Cas system. Nature (2024)

Release Date

2024-08-21

Peptides

Protein structure: ABCDEFJ
Protein structure: G
Protein structure: HIKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

J
J

G
G

H
H

I
I

K
K

L
L

Protein structure

Protein structure

Protein structure

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