SMTL ID : 8z9x.1

Cryo-EM structure of Phytanoyl-CoA-bound human very long-chain fatty acid ABC transporter ABCD3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x 01: phytanoyl-CoA

01.1: 21 residues within 4Å: Chain A: V.224, I.227, M.242, L.246, G.250, L.251, A.330, K.331, A.334, T.335, G.338, Y.339, Y.366, G.370, L.373, L.374, S.377, L.380, G.381, V.384 Chain B: E.120 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.224, A:V.224, A:V.384 Hydrogen bonds: A:A.330, A:G.381, B:E.120, B:E.120 01.2: 21 residues within 4Å: Chain A: E.120 Chain B: V.224, I.227, M.242, L.246, G.250, L.251, A.330, K.331, A.334, T.335, G.338, Y.339, Y.366, G.370, L.373, L.374, S.377, L.380, G.381, V.384 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.224, B:V.384 Hydrogen bonds: B:A.330, B:T.335, B:S.377, B:G.381, A:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, L. et al., Structural insights into human ABCD3-mediated peroxisomal acyl-CoA translocation. To Be Published

Release Date

2024-09-18

Peptides

ATP-binding cassette sub-family D member 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family D member 3