SMTL ID : 8zay.2 (1 other biounit)

Crystal structure of Fab from mouse monoclonal antibody 4A9 against Aquifex aeolicus RseP PDZ tandem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: R.102, R.104, D.112 Chain B: H.55 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.112, B:H.55, H2O.2 ZN.2: 4 residues within 4Å: Chain A: H.175 Chain B: N.138, D.167, K.169 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:H.175, B:D.167, H2O.2, H2O.4 ZN.3: 2 residues within 4Å: Chain B: E.105, K.142 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.105 ZN.4: 2 residues within 4Å: Chain B: E.185, H.189 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.185, B:E.185, B:H.189 ZN.5: 1 residues within 4Å: Chain B: D.32 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.32, H2O.3, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asahi, K. et al., Cryo-EM structure of the bacterial intramembrane metalloprotease RseP in the substrate-bound state. Sci Adv (2025)

Release Date

2025-03-05

Peptides

VH-CH1 region of antibody of anti-RseP orthologue from A aeolicus: A
Light chain of antibody of anti-RseP orthologue from A aeolicus: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
M

VH-CH1 region of antibody of anti-RseP orthologue from A aeolicus

Light chain of antibody of anti-RseP orthologue from A aeolicus

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