SMTL ID : 8zb6.2 (3 other biounits)

Yeast-expressed polio type 2 stabilized virus-like particles

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 16 residues within 4Å: Chain A: I.110, Y.112, F.130, M.132, L.134, I.157, F.159, P.181, V.183, I.194, V.199, Y.205, S.206, N.235, F.237, L.240 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.110, A:F.130, A:L.134, A:F.159, A:F.159, A:V.183, A:I.194, A:V.199, A:Y.205, A:F.237, A:F.237, A:L.240 Hydrogen bonds: A:S.206, A:N.235 SPH.2: 16 residues within 4Å: Chain D: I.110, Y.112, F.130, M.132, L.134, I.157, F.159, P.181, V.183, I.194, V.199, Y.205, S.206, N.235, F.237, L.240 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:I.110, D:F.130, D:L.134, D:F.159, D:F.159, D:V.183, D:I.194, D:V.199, D:Y.205, D:F.237, D:F.237, D:L.240 Hydrogen bonds: D:S.206, D:N.235 SPH.3: 16 residues within 4Å: Chain G: I.110, Y.112, F.130, M.132, L.134, I.157, F.159, P.181, V.183, I.194, V.199, Y.205, S.206, N.235, F.237, L.240 14 PLIP interactions: 14 interactions with chain G Hydrophobic interactions: G:I.110, G:F.130, G:L.134, G:F.159, G:F.159, G:V.183, G:I.194, G:V.199, G:Y.205, G:F.237, G:F.237, G:L.240 Hydrogen bonds: G:S.206, G:N.235 SPH.4: 16 residues within 4Å: Chain J: I.110, Y.112, F.130, M.132, L.134, I.157, F.159, P.181, V.183, I.194, V.199, Y.205, S.206, N.235, F.237, L.240 14 PLIP interactions: 14 interactions with chain J Hydrophobic interactions: J:I.110, J:F.130, J:L.134, J:F.159, J:F.159, J:V.183, J:I.194, J:V.199, J:Y.205, J:F.237, J:F.237, J:L.240 Hydrogen bonds: J:S.206, J:N.235 SPH.5: 16 residues within 4Å: Chain M: I.110, Y.112, F.130, M.132, L.134, I.157, F.159, P.181, V.183, I.194, V.199, Y.205, S.206, N.235, F.237, L.240 14 PLIP interactions: 14 interactions with chain M Hydrophobic interactions: M:I.110, M:F.130, M:L.134, M:F.159, M:F.159, M:V.183, M:I.194, M:V.199, M:Y.205, M:F.237, M:F.237, M:L.240 Hydrogen bonds: M:S.206, M:N.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, Q. et al., Vaccine Potency and Structure of Yeast-Produced Polio Type 2 Stabilized Virus-like Particles. Vaccines (Basel) (2024)

Release Date

2024-09-18

Peptides

VP1: ADGJM
VP3: BEHKN
VP2: CFILO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

B
C

E
C

H
C

K
C

N
C

C
B

F
B

I
B

L
B

O
B

VP1

VP3

VP2

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