SMTL ID : 8zc2.1

SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, head-to-head aggregate

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-6-6-6-mer
Ligands
7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
22 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Liu, B. et al., An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep (2024)
Release Date
2024-05-29
Peptides
Spike glycoprotein: ABCJKL
Light chain of D1F6 Fab: DFGMOP
Heavy chain of D1F6 Fab: EHINQR
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
J
D
K
E
L
F
D
G
F
M
G
N
M
I
O
K
P
L
E
H
H
Q
I
R
N
J
Q
O
R
P

Spike glycoprotein

Toggle Identical (AJK) Toggle Identical (CL)

Light chain of D1F6 Fab

Toggle Identical (DFGMOP)

Heavy chain of D1F6 Fab

Toggle Identical (EHINQR)

Related Entries With Identical Sequence

8zby.1 | 8zbz.1 | 8zc0.1 | 8zc1.1 | 8zc3.1 | 8zc4.1 | 8zc6.1