SMTL ID : 8zd3.2 (1 other biounit)

Crystal structure of ALPK1-N+K in complex with CDP-heptose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)

CDP.1: 12 residues within 4Å: Chain A: F.61, R.116, Y.119, Q.146, R.150, R.153, K.233, S.236, T.237, S.289, F.295 Ligands: 01.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:K.233 Hydrogen bonds: A:S.236, A:S.289 Water bridges: A:R.153, A:R.153 Salt bridges: A:R.116, A:R.116, A:R.150, A:R.150, A:R.153, A:R.153, A:K.233, A:K.233 pi-Stacking: A:F.295

1 x 01: (2R,3S,4S,5S,6R)-6-[(1S)-1,2-bis(oxidanyl)ethyl]oxane-2,3,4,5-tetrol

01.2: 14 residues within 4Å: Chain A: F.61, Q.67, Y.68, R.116, R.153, L.191, V.195, Q.198, Y.224, D.231, K.233, G.234, T.237 Ligands: CDP.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.67, A:Y.68, A:Y.68, A:R.153, A:R.153, A:Y.224, A:K.233, A:K.233, A:T.237 Water bridges: A:R.116, A:R.116, A:Q.198

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: H.205, H.264, C.267, C.271 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.205, B:H.264, B:C.267, B:C.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

She, Y. et al., crystal structure of Alpha-kinase 1 N+K in complex with CDP-hep. To be published

Release Date

2025-05-07

Peptides

Alpha-protein kinase 1: A
Alpha-protein kinase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Alpha-protein kinase 1

Alpha-protein kinase 1

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