SMTL ID : 8zd5.2 (1 other biounit)

Crystal structure of E40K variant of Cu/Zn-superoxide dismutase from dog (Canis familiaris) in the holo form complexed with 22E1 Fv-clasp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain C: H.63, H.71, H.80, D.83, Q.136 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.63, C:H.71, C:H.80, C:D.83, C:D.83 ZN.3: 5 residues within 4Å: Chain D: H.63, H.71, H.80, D.83, Q.136 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.63, D:H.71, D:H.80, D:D.83, D:D.83

2 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain C: H.46, H.48, H.63, H.120 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.46, C:H.48, C:H.120 CU.4: 4 residues within 4Å: Chain D: H.46, H.48, H.63, H.120 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.46, D:H.48, D:H.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shino, Y. et al., Disulfide-mediated oligomerization of mutant Cu/Zn-superoxide dismutase associated with canine degenerative myelopathy. Protein Sci. (2024)

Release Date

2024-11-27

Peptides

22E1VL-SARAH: AF
22E1VH-SARAH: BE
Superoxide dismutase [Cu-Zn]: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

F
C

B
E

E
B

C
A

D
D

22E1VL-SARAH

22E1VH-SARAH

Superoxide dismutase [Cu-Zn]

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