SMTL ID : 8zef.1

Crystal structure of Staphylococcus aureus DinG protein in complex with ssDNA and Ca2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

monomer

Ligands

1 x DT- DT- DT- DT: DNA (5'-D(P*TP*TP*TP*T)-3')(Non-covalent)

DT-DT-DT-DT.1: 22 residues within 4Å: Chain A: D.10, L.11, E.12, T.13, G.15, N.16, F.53, I.54, L.57, T.58, H.90, N.91, F.94, L.119, S.131, Y.132, Q.133, L.134, H.149, D.154 Ligands: CA.3, CA.4 Protein-ligand interaction information (PLIP) not available

1 x DT- DT- DT- DT- DT- DT- DT: DNA (5'-D(*TP*TP*TP*TP*TP*TP*T)-3')(Non-covalent)

DT-DT-DT-DT-DT-DT-DT.2: 21 residues within 4Å: Chain A: Y.539, I.543, R.545, F.546, Y.701, T.731, S.732, Y.733, Q.757, Q.759, S.781, T.782, K.801, F.804, N.806, K.807, N.809, F.823, K.824, R.858, Y.864 Protein-ligand interaction information (PLIP) not available

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.10, E.12, D.154 Ligands: DT-DT-DT-DT.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.10, A:E.12, A:D.154 CA.4: 4 residues within 4Å: Chain A: D.10, D.95 Ligands: DT-DT-DT-DT.1, DT-DT-DT-DT.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.10, A:D.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, K. et al., Structure of Staphylococcus aureus DinG. To Be Published

Release Date

2025-05-21

Peptides

3'-5' exonuclease DinG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3'-5' exonuclease DinG

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