SMTL ID : 8zep.1

Cryo-EM structure of Adr-2-Adbp-1-dsRBD2 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x IHP: INOSITOL HEXAKISPHOSPHATE(Covalent)(Non-covalent)

IHP.1: 16 residues within 4Å: Chain B: I.188, I.194, R.197, R.198, T.302, K.308, R.311, A.320, K.429, Y.453, K.457, Y.463, K.467, W.482, K.485, Q.490 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:R.197, B:A.320, B:K.485, B:Q.490 Salt bridges: B:R.197, B:R.198, B:R.198, B:K.308, B:K.308, B:R.311, B:R.311, B:R.311, B:K.429, B:K.457, B:K.457, B:K.457, B:K.467, B:K.467, B:K.485 IHP.3: 15 residues within 4Å: Chain C: I.188, I.194, R.197, R.198, K.308, R.311, G.319, A.320, K.429, Y.453, K.457, Y.463, K.467, K.485, Q.490 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:R.197, C:A.320, C:Y.453, C:Y.463, C:R.484, C:K.485, C:Q.490, C:Q.490 Salt bridges: C:R.197, C:R.198, C:R.198, C:K.308, C:K.308, C:R.311, C:R.311, C:K.429, C:K.429, C:K.457, C:K.457, C:K.457, C:K.467, C:K.485

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: H.191, E.193, C.244, C.305 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.191, B:C.244, B:C.305 ZN.4: 4 residues within 4Å: Chain C: H.191, E.193, C.244, C.305 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.191, C:C.244, C:C.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z.M. et al., Cryo-EM structure of Adr-2-Adbp-1-dsRBD2 complex. To Be Published

Release Date

2025-05-14

Peptides

Adr-2-binding protein 1: AD
Double-stranded RNA-specific adenosine deaminase adr-2: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
E

B
C

C
D

Adr-2-binding protein 1

Double-stranded RNA-specific adenosine deaminase adr-2

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