SMTL ID : 8zfv.1 (1 other biounit)

Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2 in complex with ceftriaxone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.18, Q.28 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.28 Water bridges: A:R.18, A:R.18, A:R.18 Salt bridges: A:R.18

2 x 9F2: Ceftriaxone(Non-covalent)

9F2.2: 4 residues within 4Å: Chain A: K.22, R.49, Q.50 Ligands: 9F2.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.22, A:R.49, A:Q.50 9F2.3: 2 residues within 4Å: Chain A: R.49 Ligands: 9F2.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dhaka, P. et al., Structural insights into the RNA binding inhibitors of the C-terminal domain of the SARS-CoV-2 nucleocapsid. J.Struct.Biol. (2025)

Release Date

2025-04-02

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nucleoprotein

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