SMTL ID : 8zg9.2 (2 other biounits)

Y-degron fused ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase PRT1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.14, S.16, C.17, V.19, C.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.14, A:C.17, A:C.41, A:C.44 ZN.2: 6 residues within 4Å: Chain A: C.29, D.31, C.32, Y.38, H.59, H.63 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.29, A:C.32, A:H.59, A:H.63 ZN.3: 6 residues within 4Å: Chain B: C.14, S.16, C.17, V.19, C.41, C.44 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.14, B:C.17, B:C.41, B:C.44 ZN.4: 7 residues within 4Å: Chain B: C.29, D.31, C.32, Y.38, H.59, T.60, H.63 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.29, B:C.32, B:H.59, B:H.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W.S. et al., Structural basis for the recognition of type-2 N-degron by PRT1 plant N-recognin. To Be Published

Release Date

2025-05-14

Peptides

Y-degron,E3 ubiquitin-protein ligase PRT1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
C

Y-degron,E3 ubiquitin-protein ligase PRT1

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