SMTL ID : 8zgv.1

Drimenyl diphosphate synthase SsDMS_F248A&D303E from Streptomyces showdoensis in complex with farnesyl diphosphate (FPP) and Mg2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.1: 20 residues within 4Å: Chain A: R.138, K.139, Q.169, W.171, N.214, I.255, M.258, F.261, F.299, D.307, E.309, D.310, W.399, Q.503, G.505, P.506, R.507, Y.511 Ligands: MG.2, MG.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.171, A:I.255, A:F.261, A:F.261, A:F.299, A:W.399, A:Y.511 Hydrogen bonds: A:R.138, A:Q.169, A:Q.169, A:R.507 Salt bridges: A:K.139, A:R.507

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: E.175, N.214 Ligands: FPP.1, MG.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.175 MG.3: 7 residues within 4Å: Chain A: M.142, Q.169, L.172, E.175, P.506 Ligands: FPP.1, MG.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, X.M. et al., Catalytic bases in class II terpene cyclases. To Be Published

Release Date

2025-05-21

Peptides

Squalene cyclase C-terminal domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Squalene cyclase C-terminal domain-containing protein

Related Entries With Identical Sequence