SMTL ID : 8zhf.1

SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, head-to-head aggregate

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-6-6-6-mer
Ligands
30 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
60 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yan, Q. et al., Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein and potentially drive the genesis of Omicron variants. Nat Commun (2024)
Release Date
2024-08-21
Peptides
Spike glycoprotein,Fibritin,Expression Tag: ABCJKL
Heavy chain of R1-26 Fab: DFHMOQ
Light chain of R1-26 Fab: EGINPR
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
J
D
K
E
L
I
D
H
F
F
H
J
M
R
O
M
Q
S
E
L
G
G
I
K
N
U
P
N
R
T

Spike glycoprotein,Fibritin,Expression Tag

Toggle Identical (ACJKL)

Heavy chain of R1-26 Fab

Toggle Identical (DFHMOQ)

Light chain of R1-26 Fab

Toggle Identical (EGINPR)

Related Entries With Identical Sequence

8zhd.1 | 8zhe.1 | 8zhg.1 | 8zhh.1 | 8zhi.1 | 8zhj.1 | 8zhk.1 | 8zhl.1 | 8zhm.1 | 8zhn.1