SMTL ID : 8zj2.1

Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain G: K.23, T.24, T.42, D.64, T.65 Ligands: GTP.2 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:T.24

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)

GTP.2: 24 residues within 4Å: Chain G: D.18, G.19, A.20, V.21, G.22, K.23, T.24, C.25, F.35, K.37, E.38, Y.39, I.40, T.42, T.65, A.66, G.67, K.123, D.125, L.126, S.165, A.166, L.167 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain G Hydrogen bonds: G:A.20, G:V.21, G:K.23, G:T.24, G:T.24, G:C.25, G:K.37, G:E.38, G:T.42, G:G.67, G:K.123, G:A.166, G:L.167 Salt bridges: G:K.23, G:K.23, G:D.125 pi-Stacking: G:F.35, G:F.35 pi-Cation interactions: G:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kukimoto-Niino, M. et al., RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state. J.Biol.Chem. (2024)

Release Date

2024-06-26

Peptides

Dedicator of cytokinesis protein 5: AC
Ras-related C3 botulinum toxin substrate 1: BD
Engulfment and cell motility protein 1: EF
Rho-related GTP-binding protein RhoG: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
F

B
C

D
G

E
E

F
A

G
D

Dedicator of cytokinesis protein 5

Ras-related C3 botulinum toxin substrate 1

Engulfment and cell motility protein 1

Rho-related GTP-binding protein RhoG

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