SMTL ID : 8zjf.1

Cryo-EM structure of human integrin alpha-E beta-7

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain B: H.397, Y.398, F.423, S.426, F.441, N.443, A.446, A.455 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.160, S.256, E.258 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.160

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.197, F.203, N.253, D.255, P.257, E.258, H.292 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.197, A:D.255, A:D.255, A:P.257 CA.4: 4 residues within 4Å: Chain A: S.162, D.165, D.166, E.372 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.162, A:D.166, A:E.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akasaka, H. et al., Cryo-EM structure of I domain-containing integrin alpha E beta 7. Biochem.Biophys.Res.Commun. (2024)

Release Date

2024-06-05

Peptides

Integrin beta-7: A
Integrin alpha-E: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Integrin beta-7

Integrin alpha-E