SMTL ID : 8zkw.1

Cryo-EM structure of the Drosophila INDY (apo-asymmetric, pH 6)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.1: 16 residues within 4Å: Chain A: M.382, M.385, L.386, P.387, Y.390, F.392, P.407, T.408, P.409, S.410 Chain B: H.40, K.42, G.43, L.44, F.47, L.54 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:P.387, A:Y.390, B:F.47, B:L.54 Hydrogen bonds: A:L.386, A:T.408, A:T.408, B:G.43 Salt bridges: B:H.40 PTY.3: 17 residues within 4Å: Chain A: F.36, H.40, K.42, G.43, L.44, F.47, L.51, L.54 Chain B: F.384, M.385, L.386, P.387, Y.390, F.392, P.407, T.408, S.410 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.47, A:L.51, A:L.54, B:L.386 Hydrogen bonds: A:N.39, A:G.43, B:T.408, B:S.410 Salt bridges: A:H.40

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.261, T.263, W.576 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.576 Hydrogen bonds: A:N.261 NAG.4: 3 residues within 4Å: Chain B: N.261, W.576, I.579 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.261, B:W.576

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Cryo-EM structures reveal the cation-independent citrate transport mechanism of the Drosophila longevity protein, INDY. To Be Published

Release Date

2025-01-29

Peptides

Protein I'm not dead yet: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Protein I'm not dead yet

Related Entries With Identical Sequence