SMTL ID : 8zle.1

hAE3NTD2TMD with PT5,CLR, and Y01

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 5 residues within 4Å: Chain A: L.1142, L.1161, H.1164 Ligands: Y01.2, PT5.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.1142, A:L.1142, A:L.1161 CLR.5: 6 residues within 4Å: Chain B: L.1142, P.1146, L.1161, H.1164 Ligands: PT5.3, Y01.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.1142, B:L.1142, B:P.1146, B:L.1161

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2: 6 residues within 4Å: Chain A: L.1142, L.1161, R.1162, H.1164, L.1165 Ligands: CLR.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.1142, A:L.1161, A:L.1161, A:L.1161, A:H.1164, A:L.1165 Salt bridges: A:R.1162 Y01.6: 7 residues within 4Å: Chain B: L.1142, L.1161, R.1162, H.1164, L.1165, A.1168 Ligands: CLR.5 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.1142, B:L.1161, B:H.1164, B:L.1165, B:A.1168 Salt bridges: B:R.1162

2 x PT5: [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate(Non-covalent)

PT5.3: 10 residues within 4Å: Chain A: F.927, P.928, G.929, R.932 Chain B: L.1143, M.1144, P.1145, K.1147, H.1148 Ligands: CLR.5 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.1143, A:F.927 Salt bridges: B:K.1147, B:K.1147, B:H.1148, A:K.508, A:R.932 Hydrogen bonds: A:R.932 PT5.4: 12 residues within 4Å: Chain A: L.1142, L.1143, P.1145, K.1147, H.1148 Chain B: K.504, F.927, P.928, G.929, R.932, R.933 Ligands: CLR.1 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.927 Hydrogen bonds: B:K.504, B:R.932 Salt bridges: B:K.504, B:K.508, B:R.932, A:K.1147, A:K.1147, A:H.1148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jian, L. et al., The structural insight into the functional modulation of human anion exchanger 3. Nat Commun (2024)

Release Date

2024-07-31

Peptides

the NTD of hAE3 with the TMD of hAE2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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the NTD of hAE3 with the TMD of hAE2