SMTL ID : 8zli.1

BTA-2-bound E46K alpha-synuclein fibrils

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

10 x 01: ~{N},~{N}-dimethyl-4-(6-methyl-1,3-benzothiazol-2-yl)aniline

01.1: 6 residues within 4Å: Chain A: H.6, G.7, V.8 Chain C: V.22 Ligands: 01.2, 01.3 No protein-ligand interaction detected (PLIP) 01.2: 5 residues within 4Å: Chain A: V.22 Chain B: H.6, G.7, V.8 Ligands: 01.1 No protein-ligand interaction detected (PLIP) 01.3: 5 residues within 4Å: Chain C: H.6, G.7, V.8 Chain E: V.22 Ligands: 01.1 No protein-ligand interaction detected (PLIP) 01.4: 9 residues within 4Å: Chain A: K.52 Chain C: I.44, K.52 Chain D: G.42, I.44, K.52 Chain E: G.42, I.44, K.52 9 PLIP interactions: 5 interactions with chain E, 3 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: E:I.44, E:K.52, C:I.44, C:K.52, D:I.44 Hydrogen bonds: E:K.52 pi-Cation interactions: E:K.52, E:K.52, C:K.52 01.5: 12 residues within 4Å: Chain A: K.2 Chain C: K.1, K.2, G.3 Chain D: K.2, G.3, V.4, V.5 Chain E: K.2, G.3, V.4, V.5 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:V.5 01.6: 6 residues within 4Å: Chain F: H.6, G.7, V.8 Chain H: V.22 Ligands: 01.7, 01.8 No protein-ligand interaction detected (PLIP) 01.7: 5 residues within 4Å: Chain F: V.22 Chain G: H.6, G.7, V.8 Ligands: 01.6 No protein-ligand interaction detected (PLIP) 01.8: 5 residues within 4Å: Chain H: H.6, G.7, V.8 Chain J: V.22 Ligands: 01.6 No protein-ligand interaction detected (PLIP) 01.9: 9 residues within 4Å: Chain F: K.52 Chain H: I.44, K.52 Chain I: G.42, I.44, K.52 Chain J: G.42, I.44, K.52 9 PLIP interactions: 5 interactions with chain J, 1 interactions with chain I, 3 interactions with chain H Hydrophobic interactions: J:I.44, J:K.52, I:I.44, H:I.44, H:K.52 Hydrogen bonds: J:K.52 pi-Cation interactions: J:K.52, J:K.52, H:K.52 01.10: 12 residues within 4Å: Chain F: K.2 Chain H: K.1, K.2, G.3 Chain I: K.2, G.3, V.4, V.5 Chain J: K.2, G.3, V.4, V.5 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:V.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Binding adaptability of chemical ligands to polymorphic alpha-synuclein amyloid fibrils. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-09-11

Peptides

Alpha-synuclein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

D
I

E
J

F
C

G
D

H
F

I
K

J
L

Alpha-synuclein

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