SMTL ID : 8zni.1

Structure of Epstein-Barr virus major glycoprotein gp350 in complex with the receptor CR2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 1 residues within 4Å: Chain B: N.457 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.457 NAG.2: 1 residues within 4Å: Chain B: N.432 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.432 NAG.3: 1 residues within 4Å: Chain B: N.212 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.212 NAG.4: 3 residues within 4Å: Chain B: D.261, K.273, N.275 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.275 NAG.5: 1 residues within 4Å: Chain B: N.374 No protein-ligand interaction detected (PLIP) NAG.6: 6 residues within 4Å: Chain B: R.319, L.321, N.323, V.350, F.351, D.353 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.319, B:N.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, C. et al., Structural basis of Epstein-Barr virus gp350 receptor recognition and neutralization. Cell Rep (2025)

Release Date

2025-01-15

Peptides

Complement receptor type 2: A
BLLF1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Complement receptor type 2

BLLF1