SMTL ID : 8zoy.1

Cryo-EM structure of human norepinephrine transporter NET bound with norepinephrine in an inward open state at a resolution of 2.5 angstrom

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x LNR: L-NOREPINEPHRINE

LNR.1: 15 residues within 4Å: Chain A: D.29, A.31, A.99, L.100, V.102, G.103, Y.106, F.271, S.272, G.274, F.277, V.279, S.373, S.374, G.377 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.99, A:V.102 Hydrogen bonds: A:D.29, A:D.29, A:A.99, A:G.103, A:Y.106 Water bridges: A:N.107, A:S.374, A:G.377 pi-Stacking: A:F.277

1 x CL: CHLORIDE ION

CL.2: 7 residues within 4Å: Chain A: N.32, F.36, Y.52, Q.268, S.272, N.304, S.308 Ligand excluded by PLIP

1 x PTY: PHOSPHATIDYLETHANOLAMINE

PTY.3: 15 residues within 4Å: Chain A: K.89, G.90, Y.93, I.96, L.97, L.100, V.381, L.385, D.388, F.389, L.522, I.525, Y.526, Y.529, K.530 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.93, A:Y.93, A:Y.93, A:I.96, A:L.97, A:L.100 Hydrogen bonds: A:Y.93, A:D.388, A:Y.529 Salt bridges: A:K.89, A:K.530

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, A. et al., Mechanistic insights of substrate transport and inhibitor binding revealed by high-resolution structures of human norepinephrine transporter. Cell Res. (2024)

Release Date

2024-09-11

Peptides

Sodium-dependent noradrenaline transporter: A
Nb_BF9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent noradrenaline transporter

Nb_BF9

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