SMTL ID : 8zp1.1

Cryo-EM structure of human norepinephrine transporter NET bound with reboxetine in an outward-open state at a resolution of 2.5 angstrom

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION

CL.1: 7 residues within 4Å: Chain A: N.32, F.36, Y.52, Q.268, S.272, N.304, S.308 Ligand excluded by PLIP

1 x 01: (2~{S})-2-[(~{S})-(2-ethoxyphenoxy)-phenyl-methyl]morpholine

01.2: 22 residues within 4Å: Chain A: F.26, A.27, V.28, D.29, I.98, A.99, V.102, G.103, Y.105, Y.106, F.271, S.272, L.273, G.274, F.277, V.279, S.373, S.374, G.377, A.431, I.435 Ligands: NA.4 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.102, A:V.102, A:V.102, A:Y.106, A:Y.106, A:F.277, A:A.431 Hydrogen bonds: A:F.26, A:S.373 pi-Stacking: A:Y.106

2 x NA: SODIUM ION

NA.3: 7 residues within 4Å: Chain A: G.25, F.26, V.28, D.29, L.369, D.372, S.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.25, A:S.373 NA.4: 8 residues within 4Å: Chain A: A.27, V.28, D.29, A.31, N.32, S.272, N.304 Ligands: 01.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.32, A:S.272

1 x PTY: PHOSPHATIDYLETHANOLAMINE

PTY.5: 14 residues within 4Å: Chain A: K.89, G.90, Y.93, I.96, L.97, L.100, L.385, D.388, F.389, L.522, I.525, Y.526, Y.529, K.530 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.93, A:Y.93, A:Y.93, A:L.97, A:L.385, A:I.525, A:Y.526 Hydrogen bonds: A:Y.93, A:D.388, A:Y.529 Salt bridges: A:K.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, A. et al., Mechanistic insights of substrate transport and inhibitor binding revealed by high-resolution structures of human norepinephrine transporter. Cell Res. (2024)

Release Date

2024-09-11

Peptides

Sodium-dependent noradrenaline transporter: A
Nb_BB4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent noradrenaline transporter

Nb_BB4

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